$re = '`(BBF10K)(.*)\.(gb|gbk)`m';
$str = 'friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/2a_keoni_pip501_transfe.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/2b_orit_oyc.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/3a_ecoli_kanr.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/4_ecoori_cole1pmb1pbr32.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/5_bsubori_pbs72_repa.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/6_cata9.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/7_bsub_laci_laco_promo.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000207.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000210.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000211.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000217.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000227.gb';
preg_match_all($re, $str, $matches, PREG_SET_ORDER, 0);
// Print the entire match result
var_dump($matches);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php