# coding=utf8
# the above tag defines encoding for this document and is for Python 2.x compatibility
import re
regex = r"((AND|OR|NOT)( ))?([a-z_A-Z0-9]*):(\"\w+.*\"|\w+(:?\w+))"
test_str = ("homo sapiens AND curationstatus:\"Manually curated\" AND modellingapproach:\"Ordinary differential equation model\"\n\n"
"test AND UNIPROT:23456 AND metabolism AND heart AND TAXONOMY:40674 AND curation:\"Non curated\" AND GO:GO:34212 AND publication:23444 AND modellingapproach:\"logical model\" AND cancer\n\n"
"modelformat:\"SBML\" AND modelformat:\"SBML\" AND modellingapproach:\"Ordinary differential equation model\" AND TAXONOMY:9606\n\n"
"*:* AND modelformat:\"SBML\" AND modellingapproach:\"Ordinary differential equation model\" AND TAXONOMY:9606 AND TAXONOMY:10090\n\n"
"*:* AND disease:\"Lung Adenocarcinoma\" AND cancer AND tumor")
matches = re.finditer(regex, test_str, re.MULTILINE)
for matchNum, match in enumerate(matches, start=1):
print ("Match {matchNum} was found at {start}-{end}: {match}".format(matchNum = matchNum, start = match.start(), end = match.end(), match = match.group()))
for groupNum in range(0, len(match.groups())):
groupNum = groupNum + 1
print ("Group {groupNum} found at {start}-{end}: {group}".format(groupNum = groupNum, start = match.start(groupNum), end = match.end(groupNum), group = match.group(groupNum)))
# Note: for Python 2.7 compatibility, use ur"" to prefix the regex and u"" to prefix the test string and substitution.
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html