// include the latest version of the regex crate in your Cargo.toml
extern crate regex;
use regex::Regex;
fn main() {
let regex = Regex::new(r#"(?m)process\s+(\w+|\"[^\"]+\"|'[^']+')\s*{((.|\n|\r)*)}"#).unwrap();
let string = "nextflow.enable.dsl=2
// params.module_dir = '.'
params.dbs_dir = '/mnt/OmicNAS/dd/alphafold/dbs'
params.max_template_date = '2020-05-14'
params.db_preset = 'reduced_dbs'
params.model_preset = 'monomer'
params.outdir = './'
params.cachedir = '/mnt/OmicNAS/cache/alphafold'
process ALPHAFOLD {
conda \"${moduleDir}/environment.yml\"
echo true
maxForks 1
stageInMode 'copy'
storeDir \"${params.cachedir}\"
publishDir \"${params.outdir}\", mode: 'copy'
input:
path fasta
output:
path \"*\", emit: outputs
script:
\"\"\"
python3 ${moduleDir}/docker/run_docker.py \\
--fasta_paths=${fasta} \\
--max_template_date=${params.max_template_date} \\
--model_preset=${params.model_preset} \\
--db_preset=${params.db_preset} \\
--data_dir=${params.dbs_dir} \\
--output_dir=\\$PWD
\"\"\"
}
";
// result will be an iterator over tuples containing the start and end indices for each match in the string
let result = regex.captures_iter(string);
for mat in result {
println!("{:?}", mat);
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Rust, please visit: https://docs.rs/regex/latest/regex/