package main
import (
"regexp"
"fmt"
)
func main() {
var re = regexp.MustCompile(`(?m)process\s+(\w+|\"[^\"]+\"|'[^']+')\s*{((.|\n|\r)*)}`)
var str = `nextflow.enable.dsl=2
// params.module_dir = '.'
params.dbs_dir = '/mnt/OmicNAS/dd/alphafold/dbs'
params.max_template_date = '2020-05-14'
params.db_preset = 'reduced_dbs'
params.model_preset = 'monomer'
params.outdir = './'
params.cachedir = '/mnt/OmicNAS/cache/alphafold'
process ALPHAFOLD {
conda "${moduleDir}/environment.yml"
echo true
maxForks 1
stageInMode 'copy'
storeDir "${params.cachedir}"
publishDir "${params.outdir}", mode: 'copy'
input:
path fasta
output:
path "*", emit: outputs
script:
"""
python3 ${moduleDir}/docker/run_docker.py \
--fasta_paths=${fasta} \
--max_template_date=${params.max_template_date} \
--model_preset=${params.model_preset} \
--db_preset=${params.db_preset} \
--data_dir=${params.dbs_dir} \
--output_dir=\$PWD
"""
}
`
for i, match := range re.FindAllString(str, -1) {
fmt.Println(match, "found at index", i)
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Golang, please visit: https://golang.org/pkg/regexp/