use strict;
my $str = '<html>
<h1>I poop <?php echo $whatHePoops; ?></h1>
</html>
<input type="text" class="input input-1" id="CompanyName" name="CompanyName" data-toggle="tooltip" data-placement="top" title="Company Name/ Name of the Customer" placeholder="Company Name/ Name of the Customer" value="<?php echo $root[\'companyProfile\'][\'customerCompanyName\']; ?>">';
my $regex = qr/value="(?=<\?php)[^"]+"/p;
my $subst = '';
my $result = $str =~ s/$regex/$subst/rg;
print "The result of the substitution is' $result\n";
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html