use strict;
my $str = '11 12345 54321 a t';
my $regex = qr/^(chr)?(1|2|3|4|5|6|7|8|9|10|11|12|13|14|15|16|17|18|19|20|21|22|X|Y)((:|\s+)\d+((-|\s+)\d+((_|\s+)[ACGT]+((\/|\s+)[ACGT]+)?)?)?)?$/ip;
if ( $str =~ /$regex/ ) {
print "Whole match is ${^MATCH} and its start/end positions can be obtained via \$-[0] and \$+[0]\n";
# print "Capture Group 1 is $1 and its start/end positions can be obtained via \$-[1] and \$+[1]\n";
# print "Capture Group 2 is $2 ... and so on\n";
}
# ${^POSTMATCH} and ${^PREMATCH} are also available with the use of '/p'
# Named capture groups can be called via $+{name}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html